Volume 6; Issue 1 Suppleme

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Epigenetics & Chromatin
Volume 6; Issue 1 Suppleme

Epigenetics & Chromatin

Volume 6; Issue 1 Suppleme

1

Genome-wide analysis reveals TET-and TDG-mediated 5-methylcytosine oxidation dynamics

Shen, Li, Wu, Hao, Diep, Dinh, DâAlessio, Ana C, Fung, Alan, Zhang, Kun, Zhang, Yi

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 174 KB

english, 2013

2

Cigarette smoking induces small airway epithelial epigenetic changes with corresponding modulation of gene expression

Buro-Auriemma, Lauren J, Hackett, Neil R, Salit, Jacqueline, Walters, Matthew S, Strulovici-Barel, Yael, Staudt, Michelle R, Fuller, Jennifer, Ho, Melisa WY, Crystal, Ronald G

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 178 KB

english, 2013

3

Chromatin reassembly following RNA polymerase II transcription

Venkatesh, Swaminathan, Smolle, Michaela, Li, Hua, Gogol, Madelaine, Zhang, Ying, Laurens, Florence, Washburn, Michael P, Workman, Jerry L

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 174 KB

english, 2013

4

Abstract not submitted for online publication: Epigenetics and Chromatin: Interactions and processes

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 71 KB

english, 2013

5

Abstract not submitted for online publication: Epigenetics and Chromatin: Interactions and processes

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 71 KB

english, 2013

6

Abstract not submitted for online publication: Epigenetics and Chromatin: Interactions and processes

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 71 KB

english, 2013

7

Abstract not submitted for online publication: Epigenetics and Chromatin: Interactions and processes

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 71 KB

english, 2013

8

Abstract not submitted for online publication: Epigenetics and Chromatin: Interactions and processes

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 71 KB

english, 2013

9

Abstract not submitted for online publication: Epigenetics and Chromatin: Interactions and processes

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 72 KB

english, 2013

10

Abstract not submitted for online publication: Epigenetics and Chromatin: Interactions and processes

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 71 KB

english, 2013

11

Abstract not submitted for online publication: Epigenetics & Chromatin: Interactions and processes

Journal:

Epigenetics & Chromatin

Year:

2013

File:

PDF, 68 KB

2013

12

Abstract not submitted for online publication: Epigenetics and Chromatin: Interactions and processes

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 71 KB

english, 2013

13

Abstract not submitted for online publication: Epigenetics and Chromatin: Interactions and processes

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 71 KB

english, 2013

14

Abstract not submitted for online publication: Epigenetics and Chromatin: Interactions and processes

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 71 KB

english, 2013

15

Abstract not submitted for online publication: Epigenetics & Chromatin: Interactions and processes

Journal:

Epigenetics & Chromatin

Year:

2013

File:

PDF, 68 KB

2013

16

Abstract not submitted for online publication: Epigenetics and Chromatin: Interactions and processes

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 72 KB

english, 2013

17

Abstract not submitted for online publication: Epigenetics and Chromatin: Interactions and processes

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 72 KB

english, 2013

18

Abstract not submitted for online publication: Epigenetics and Chromatin: Interactions and processes

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 71 KB

english, 2013

19

Abstract not submitted for online publication: Epigenetics and Chromatin: Interactions and processes

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 71 KB

english, 2013

20

Abstract not submitted for online publication: Epigenetics and Chromatin: Interactions and processes

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 71 KB

english, 2013

21

Abstract not submitted for online publication: Epigenetics and Chromatin: Interactions and processes

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 71 KB

english, 2013

22

Erratum to: Epigenetics & Chromatin: Interactions and processes

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 81 KB

english, 2013

23

Absrtact not submitted for online publication: Epigenetics and Chromatin: Interactions and processes

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 71 KB

english, 2013

24

Abstract not submitted for online publication: Epigenetics and Chromatin: Interactions and processes

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 71 KB

english, 2013

25

Abstract not submitted for online publication: Epigenetics and Chromatin: Interactions and processes

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 71 KB

english, 2013

26

Abstract not submitted for online publication: Epigenetics and Chromatin: Interactions and processes

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 71 KB

english, 2013

27

Abstract not submitted for online publication: Epigenetics and Chromatin: Interactions and processes

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 71 KB

english, 2013

28

Abstract not submitted for online publication: Epigenetics and Chromatin: Interactions and processes

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 71 KB

english, 2013

29

Abstract not submitted for online publication: Epigenetics and Chromatin: Interactions and processes

Journal:

Epigenetics & Chromatin

Year:

2013

File:

PDF, 70 KB

2013

30

Abstract not submitted for online publication: Epigenetics and Chromatin: Interactions and processes

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 71 KB

english, 2013

31

Abstract not submitted for online publication: Epigenetics and Chromatin: Interactions and processes

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 72 KB

english, 2013

32

Abstract not submitted for online publication: Epigenetics and Chromatin: Interactions and processes

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 71 KB

english, 2013

33

Abstract not submitted: Epigenetics and Chromatin: Interactions and processes

Journal:

Epigenetics & Chromatin

Year:

2013

File:

PDF, 68 KB

2013

34

Abstract not submitted for online publication: Epigenetics and Chromatin: Interactions and processes

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 71 KB

english, 2013

35

Abstract not submitted for online publication: Epigenetics and Chromatin: Interactions and processes

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 71 KB

english, 2013

36

Abstract not submitted for online publication: Epigenetics and Chromatin: Interactions and processes

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 71 KB

english, 2013

37

Abstract not submitted for online publication: Epigenetics & Chromatin: Interactions and processes

Journal:

Epigenetics & Chromatin

Year:

2013

File:

PDF, 68 KB

2013

38

Abstract not submitted for online publication: Epigenetics and Chromatin: Interactions and processes

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 71 KB

english, 2013

39

Abstract not submitted for online publication: Epigenetics & Chromatin: Interactions and processes

Journal:

Epigenetics & Chromatin

Year:

2013

File:

PDF, 68 KB

2013

40

Abstract not submitted for online publication: Epigenetics and Chromatin: Interactions and processes

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 71 KB

english, 2013

41

Abstract not submitted for online publication: Epigenetics & Chromatin: Interactions and processes

Journal:

Epigenetics & Chromatin

Year:

2013

File:

PDF, 68 KB

2013

42

Abstract not submitted for online publication: Epigenetics & Chromatin: Interactions and processes

Journal:

Epigenetics & Chromatin

Year:

2013

File:

PDF, 68 KB

2013

43

Abstract not submitted for online publication: Epigenetics and Chromatin: Interactions and processes

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 71 KB

english, 2013

44

Abstract not submitted for online publication: Epigenetics and Chromatin: Interactions and processes

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 71 KB

english, 2013

45

Abstract not submitted for online publication: Epigenetics and Chromatin: Interactions and processes

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 71 KB

english, 2013

46

Erratum to: Epigenetics & Chromatin: Interactions and processes

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 81 KB

english, 2013

47

Understanding histone-DNA interactions in the common bean (Phaseolus vulgarisL.)

Venu (Kal) Kalavacharla

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 84 KB

english, 2013

48

Role of Ldb1 in the transition from chromatin looping to transcription activation

Ivan Krivega, Ann Dean

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 89 KB

english, 2013

49

ISWI and CHD chromatin remodelers bind to promoters but act in gene bodies

Gabriel E Zentner, Toshio Tsukiyama, Steven Henikoff

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 81 KB

english, 2013

50

XACT, a long non-coding transcript coating the active X chromosome in human pluripotent cells

Céline Vallot, Christophe Huret, Yann Lesecque, Alissa Resch…

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 79 KB

english, 2013

51

Genetic dissection of quantitative epigenomic variation in yeast

Anne-Laure Abraham, Muniyandi Nagarajan, Jean-Baptiste Veyrieras…

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 86 KB

english, 2013

52

Profiling the impact of the embryonic microenvironment through global transcriptomic and DNA methylome surveying

Habib A Shoiaei Saadi, Dominic Gagné, Eric Fournier…

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 76 KB

english, 2013

53

Identifying genomic features by BLASTing through chromatin

William KM Lai, Michael J Buck

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 82 KB

english, 2013

54

Using the lagging strand to study chromosome replication

S McGuffee, D Smith, I Whitehouse

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 81 KB

english, 2013

55

Activating the genome during development and exit from mitosis

Ken Zaret, Katherine Palozola, Jan Manuel Caravaca

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 80 KB

english, 2013

56

Creation of a novel imprinting locus

David Taylor, Chelsea Brideau, Warren Wu, Alex Wang…

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 76 KB

english, 2013

57

Sex-specific chromatin states in mammalian fetal germ cells

Bluma J Lesch, David C Page

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 78 KB

english, 2013

58

Genome wide analysis of DNA methylation and nucleosome positioning

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 81 KB

english, 2013

59

Charting the regulatory landscape of the mouse genomein vivo

Orsolva Symmons, Laurence Ettwiller, Sandra Ruf, Veli Uslu…

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 76 KB

english, 2013

60

Mithramycin interacts with core histones and modulates epigenetic modifications

Amrita Banerjee, Chandrima Das, Dipak Dasgupta

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 82 KB

english, 2013

61

Expression of the repeat genome and aberrant epigenetic factors in cancer

Dawn M Carone, Lisa L Hall, Meg Byron, Jeanne B Lawrence

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 78 KB

english, 2013

62

Set1 cooperates with CENP-B in genome organization and transcriptome regulation

David R Lorenz, Irina V Mikheyeva, Lauren Meyer, Peter Johansen…

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 84 KB

english, 2013

63

Control of antigen receptor gene assembly by cis-element mediated looping

Kinjal Majumder, Olivia Koues, Suhasni Gopalakrishnan…

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 83 KB

english, 2013

64

The dinucleotide CG as a genomic signalling module

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 82 KB

english, 2013

65

Controlling long-range genomic interactions to reprogram the β-globin locus

Wulan Deng, Jeremy W Rupon, Hongxin Wang, Andreas Reik…

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 86 KB

english, 2013

66

Establishment of pericentromeric heterochromatin in development

Angele Santenard, Joanna Jachoviwcz, Maria-Elena Torres-Padilla

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 79 KB

english, 2013

67

Analogues of the natural product Sinefungin as potent inhibitors of EHMT1 and EHMT2

Kanchan Devkota, Brian Lohse, Qing Liu, Ming-Wei Wang…

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 97 KB

english, 2013

68

Identification of regions in the HOX cluster that can confer repression in a Polycomb-dependent manner

Caroline J Woo, Peter V Kharchenko, Laurence Daheron…

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 82 KB

english, 2013

69

LncRNAs expression signatures of cadmium-induced malignant transformation of human bronchial epithelial cells revealed by microarray

Zhi-heng Zhou, Cai-xia Wang, Yi-xiong Lei, Hai-bai Liu, Min Wang

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 87 KB

english, 2013

70

Pausing as a mechanism of nucleosome recovery

Han-Wen Chang, Olga I Kulaeva, Alexey Shaytan, M Kibanov…

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 82 KB

english, 2013

71

Elucidating the mechanisms underlying GATA-1 activity

Roland Gamsjaeger, Ana Silva, Nicholas Shepherd…

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 86 KB

english, 2013

72

Genome-wide analysis of promoter and enhancer usage in hematopoietic stem cell differentiation

Annarita Miccio, Clelia Peano, Oriana Romano…

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 89 KB

english, 2013

73

Hydroxymethylated cytosine in development and disease

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 80 KB

english, 2013

74

DNA methylation analysis at imprinted locus and global methylation in spermatozoa of normozoospermic individuals of idiopathic Recurrent Spontaneous Miscarriage

Mandar M Ankolkar, Himangi Warke, Vinita Salvi, Neelam K Mokashi…

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 95 KB

english, 2013

75

High-resolution mapping of transcription factor binding sites on native chromatin

Sivakanthan Kasinathan, Steven Henikoff

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 80 KB

english, 2013

76

Mating type specific chromosome conformation inSaccharomyces cerevisiae

Jon-Matthew Belton, Davide Bau, Imen Lassardi, Kerstin Bystricky…

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 90 KB

english, 2013

77

Locus-specific biochemical epigenetics/chromatin biochemistry by insertional chromatin immnoprecipitation (iChIP)

Toshitsugu Fujita, Hodaka Fujii

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 90 KB

english, 2013

78

Identification of promoter targets of enhancers by epigenetic knockdown using TAL DNA binding proteins

Eric M Mendenhall, Kaylyn Williamson, Deepak Reyon…

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 89 KB

english, 2013

79

To be or not to be a Queen: the dark side of the ant genome

Claire Morandin, Yutaka Watanabe, Misato Okamoto, Man Ying Tin…

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 90 KB

english, 2013

80

Genome-wide analysis of chromatin architecture inOxytricha trifallax: a single-celled eukaryote with 16,000 tiny chromosomes

Leslie Y Beh, Laura F Landweber

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 85 KB

english, 2013

81

Amplification-free whole-genome shotgun bisulfite sequencing of mouse primordial germ cells

Hisato Kobayashi, Takayuki Sakurai, Fumihito Miura, Misaki Imai…

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 90 KB

english, 2013

82

Consequences of oncogenic isocitrate dehydrogenase mutations and 2-hydroxyglutarate production in prostate epithelium

Jon A Over, Jonathan D Licht

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 89 KB

english, 2013

83

Bookmarking by specific and nonspecific binding of FoxA1 pioneer factor to mitotic chromosomes

Juan Manuel Caravaca, Greg Donahue, Justin S Becker…

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 81 KB

english, 2013

84

DNA methylation and gene expression patterns in breast cancer progression fromin situcarcinoma to invasive carcinoma

Thomas Fleischer, Hege Edvardsen, Jovana Jovanovic…

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 93 KB

english, 2013

85

Function of HP1 proteins as a component in kinetochore formation and its relation with chromosome instability

Rodrigo González-Barrios, Ernesto Soto-Reyes, Julia Medoza Perez…

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 84 KB

english, 2013

86

Polycomb-independent activity of EZH2 in castration resistant prostate cancer

Kexin Xu, Zhenhua Jeremy Wu, Anna C Groner, Housheng Hansen He…

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 89 KB

english, 2013

87

Developmental regulation of nucleoplasmin function by phosphorylation, glutamylation, and methylation

Takashi Onikubo, Joshua J Nicklav, Wei-Lin Wang…

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 88 KB

english, 2013

88

Association of modified cytosines and the methylated DNA-binding protein MeCP2 with distinctive structural domains of lampbrush chromatin

Garry T Morgan, Peter L Jones, Michel Bellini

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 83 KB

english, 2013

89

Systematic optimization of parameters involved in preparation of chromatin and chromatin immunoprecipitation (ChIP) workflow

John M Rosenfeld, Tracy Cooke, Zirong Li, Kan Saito…

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 79 KB

english, 2013

90

The role of TRIM24 during prostate cancer progression

Anna C Groner, Myles Brown

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 84 KB

english, 2013

91

Chromatin modifications and dynamics during repair of a double-strand chromosome break in budding yeast

James E Haber, Cheng-Sheng Lee, Kihoon Lee, Michael Tsabar…

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 86 KB

english, 2013

92

Reprogramming the chromain landscape at eukaryotic regulatory elements

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 82 KB

english, 2013

93

System-wide studies of the transcriptional programming ofchromatinduring early hematopoietic development

Nadine Obier, Mahalingam S Vijayabaskar, Stella Pearson…

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 89 KB

english, 2013

94

Silencing subtelomericVSGsbyTrypanosoma bruceiRAP1 at the insect stage involves chromatin structure changes

Unnati M Pandya, Ranjodh Sandhu, Bibo Li

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 81 KB

english, 2013

95

Cytosine methylation and hydroxymethylation mark DNA for elimination inOxytricha trifallax

John R Bracht, David H Perlman, Laura F Landweber

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 85 KB

english, 2013

96

Genome-wide nucleosome mapping in multiple myeloma

Eliza C Small, Quanwei Zhang, Relja Popovic, Youjia Hua…

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 72 KB

english, 2013

97

Pioneer transcription factor FoxA is positioned on hypersensitive nucleosomes at active enhancers

Makiko Iwafuchi-Doi, Greg Donahue, Jason Watts, Isabel Cuesta…

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 81 KB

english, 2013

98

The hematopoietic master regulator RUNX1 reshapes the epigenetic landscape at the onset of hematopoiesis

Monika Lichtinger, Nadine Obier, Richard Ingram, Rebecca Hannah…

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 87 KB

english, 2013

99

The structure of Polycomb-repressed chromatin in the bithorax complex

Sarah K Bowman, Aimee M Deaton, Heber Domingues, Welcome Bender…

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 84 KB

english, 2013

100

Nuclear envelope laminopathies: evidence for developmentally inappropriate chromatin-nuclear envelope interactions

Jelena Perovanovic, Jyoti Jaswal, Nikola Markovic, Eric Hoffman

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 93 KB

english, 2013

101

Spatial compartmentalization at the nuclear periphery characterized by genome-wide mapping

Feinan Wu, Jie Yao

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 94 KB

english, 2013

102

Chromosomal architecture changes upon cell differentiation

Maxim Imakaev, Geoffrey Fudenberg, Leonid Mirny

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 77 KB

english, 2013

103

Effect of cell separation on gene expression and DNA methylation profiles in intestinal epithelial cells

M Molitor, J Postberg, V Orth, M Zilbauer, AC Jenke

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 83 KB

english, 2013

104

Gene dosage in mammals: characterization of haploid embryonic stem cells

Anton Wutz, Martin Leeb

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 80 KB

english, 2013

105

Transcriptome dysregulation and epigenome signature responses in hepatocytes upon hepatitis B virus infection and therapy

Andreas Klein, Lisa Wiluhn, Theodor Winkler, Timo Deba…

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 84 KB

english, 2013

106

Spatial organization and nuclear positioning of murine immunoglobulin loci in developing B cells

Magdalena B Rother, Kevin AM van Kester, Jacgues JM van Dongen…

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 94 KB

english, 2013

107

Polymer models of yeastS. cerevisiaegenome organization

Geoff Fudenberg, Jon-Matthew Belton, Anton Goloborodko…

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 80 KB

english, 2013

108

Acquisition of regeneration competence in adult fibroblasts is accompanied by upregulation of arginine methyltransferase PRMT8

Sarah Runqe, Tanja Dominko

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 77 KB

english, 2013

109

Heterochromatic silencing inDrosophila melanogaster

Sarah CR Elgin, Tingting Gu, Kiri Ulmschneider

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

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english, 2013

110

Towards a causative function of histone modifications in regulation of chromatin dynamics and transcription

Philipp Tropberger, Sebastian Pott, Kinga Kamieniarz…

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

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english, 2013

111

Identifying candidate ncRNAs that direct changes in chromatin structure

Mridula K Ray, Yanqun Wang, Mark Borowsky, Ruslan Sadreyev…

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

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english, 2013

112

PHF6 regulates cell cycle progression by suppressing ribosomal RNA synthesis

Jiadong Wang, Justin Wai Chung Leung, Zihua Gong, Lin Feng…

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 86 KB

english, 2013

113

Co-transcriptional histone methylations

Stephen Buratowski

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 81 KB

english, 2013

114

Epigenetic genome control by heterochromatin and RNAi machinery

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 84 KB

english, 2013

115

Abrogation of Brd4 cellular function contributes to the oncogenic mechanisms of translocation t(15;19)-associated carcinoma

Ranran Wang, Christine M Heifer, Jianxin You

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 88 KB

english, 2013

116

Genome-wide analysis reveals TET-and TDG-mediated 5-methylcytosine oxidation dynamics

Li Shen, Hao Wu, Dinh Diep, Ana C D’Alessio, Alan Fung…

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

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english, 2013

117

Deciphering the evolutionary origin of theRB1imprint

Deniz Kanber, Christian Roos, Jörg Gromoll, Bernhard Horsthemke…

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

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english, 2013

118

Cellular and molecular mechanisms of neuronal loss in Atrx-knockout mice

Pamela S Lagali, Chantal F Medina, Keqin Yan, Alan J Mears…

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

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english, 2013

119

The mechanism and consequences of chromatin assembly and disassembly

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 78 KB

english, 2013

120

DNA methylation alone does not cause most cell-type selective transcription factor binding

Matthew T Maurano, Hao Wang, Anthony Shafer, Sam John…

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

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english, 2013

121

DNA methylation markers for disease progression and survival in Barrett’s Esophagus

Marc Taenzer, Michael Quante, Magdalena Liebl, Roland M Schmid

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 86 KB

english, 2013

122

Histone modifications regulate DNA replication coupled nucleosome assembly

Junhong Han, Qing Li, Hui Zhou, Zhiguo Zhang

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 81 KB

english, 2013

123

Folding principles of genomes

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

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english, 2013

124

Coordinated epigenetic regulation ofEngrailed-1by the chromatin remodelersSmarca1andSmarca5mediates cerebellar morphogenesis

Matias Alvarez-Saavedra, Pamela Lagali, Keqin Yan, Emile Hashem…

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 79 KB

english, 2013

125

Disruption of CTCF at themiR-125b1locus in gynecological cancers and breast cancer cell lines

Ernesto Soto-Reves, Fernanda Cisneros-Soberanis…

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 77 KB

english, 2013

126

Pre-mRNA splicing is a determinant of nucleosome organization

Hadas Keren-Shaul, Galit Lev-Maor, Gil Ast

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 96 KB

english, 2013

127

Integrated analyses of chromatin accessibility and gene expression data for elucidating the transcriptional regulatory mechanisms during early hematopoietic development in mouse

Mahalingam S Viiavabaskar, Nadine Obier, Stella Pearson…

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 87 KB

english, 2013

128

Prior epigenetic priming of cytokine genes in naive T cells is required for their subsequent activation by inducible enhancers

Sally R James, Sarah L Bevington, Fabio Mirabella…

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 77 KB

english, 2013

129

Chromatin remodeling by the CHD7 protein is impaired by mutations that cause human developmental disorders

Karim Bouazoune, Robert E Kingston

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 85 KB

english, 2013

130

Thermodynamic insights into histone transfer among chaperones

Wallace H Liu, Sarah C Roemer, Alex M Port, Mair EA Churchill

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 82 KB

english, 2013

131

Control of androgen receptor action by a novel nuclear receptor binding motif in Bag-1L

Laura Cato, Katja Jehle, Antje Neeb, Andrew CB Cato, Myles Brown

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 87 KB

english, 2013

132

MeCP2 binds to 5hmc enriched within active genes and accessible chromatin in the nervous system

Marian Mellen, Pinar Ayata, Scott Dewell, Skirmantas Kriaucionis…

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 84 KB

english, 2013

133

Epigenetic deregulation of BORIS and CTCF in breast cancer

Iliana Alcalá Moreno, Ernesto Soto-Reyes…

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 78 KB

english, 2013

134

Imaging heterochromatin in human embryonic stem cells with light-sheet Bayesian microscopy

Ying S Hu, Quan Zhu, James Fitzpatrick, Inder M Verma, Hu Cang

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 78 KB

english, 2013

135

DNA demethylation of neuronal cell death genes in depression

Yurong Xin, Anne O’Donell, Yongchao Ge, Benjamin Chanrion…

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 91 KB

english, 2013

136

Core promoter elements are not essential for transcription in mammals

Zohar S Barbash, Jocelvn D Weissman, Jie Mu, Dinah S Singer

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 81 KB

english, 2013

137

Gene specific overwriting of epigenetic signatures to modulate the expression of selected tumor-promoting genes in cancer

Fahimeh Falahi, Christian Huisman, Elisa Garcia Diaz…

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 94 KB

english, 2013

138

Quantitative proteomic tools for analyzing histone modifications

Benjamin A Garcia

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 80 KB

english, 2013

139

TheH19locus: regulatory function of an imprinted non coding RNA in embryonic development

Paul Monnier, Clémence Martinet, Luisa Dandolo

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 82 KB

english, 2013

140

Correlations between DNA methylation levels and nucleosome enrichment in the human genome

Clayton K Collings, John N Anderson

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 77 KB

english, 2013

141

Asymmetric cell division via DNA strand-specific epigenetic imprinting and segregation explains eukaryotic development

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 89 KB

english, 2013

142

5mC and 5hmC dynamics during PGC reprogramming and role of Tet1 in female meiosis

Shinpei Yamaguchi, Kwonho Hong, Rui Liu, Li Shen, Azusa Inoue…

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 82 KB

english, 2013

143

Phospho-dependent recruitment of NuA4 by MRX at DNA breaks regulates RPA dynamics during resection

Olivier Jobin-Robitaille, Pierre Billon, Rémi Buisson…

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 90 KB

english, 2013

144

Chromatin remodeling induced by histone deacetylase inhibitors (HDACis) in HeLa, NIH 3T3 and HepG2 cells

Marina B Felisbino, Maria SV Gatti, Giovana MB Veronezi…

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 93 KB

english, 2013

145

Effects of hyperglycemia on the regulation and expression of theApoe,Igfbp1andFoxo1genes and on nuclear phenotypes in HepG2 cells

Flávia G Ghiraldini, Maria Luiza S Mello

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 94 KB

english, 2013

146

Methylation of histone H3 at lysine 23 in meiotic heterochromatin

Romeo Papazvan, Ekaterina Voronina, Jessica R Chapman…

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 86 KB

english, 2013

147

Methylation and hydroxymethylation of CpG display dynamic landscapes in early embryo development and define differentiation into embryonic and placental lineages

Yan Li, Chris O’Neill

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 75 KB

english, 2013

148

Oligopaints: highly efficient, bioinformatically designed probes for fluorescencein situhybridization

Brian J Beliveau, Eric F Joyce, Nicholas Apostolopoulosa…

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 87 KB

english, 2013

149

A role for the histone chaperone DAXX in the structural organization of heterochromatin

Lindsy M Rapkin, Kashif Ahmed, Ren Li, David P Bazett-Jones

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 89 KB

english, 2013

150

Centromere-specific histone Cse4 by the chaperone Scm3

Uhn-Soo Cho, Stephen C Harrison

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 83 KB

english, 2013

151

ImprintedXlr3(X-linked Lymphocyte Regulated 3) produces a meiosis specific protein implicated in sex chromosome gene regulation in mouse

Robert J Foley, Seth Kasowitz, Emily Clancy, Andrew Sadowski…

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 97 KB

english, 2013

152

Chromatin assembly from nucleosome to heterochromatin: the issue of DNA damage

Geneviève Almouzni

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 89 KB

english, 2013

153

A prominent and conserved role for YY1 in Xist transcriptional activation

Jean-Francois Ouimette, Mélanie Makhlouf, Andrew Oldfield…

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 85 KB

english, 2013

154

Kinetic control of nucleosome displacement by ISWI/ACF chromatin remodelers

Ana-Maria Florescu, Helmut Schiessel, Ralf Blossey

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 81 KB

english, 2013

155

Myosin 5 evolution and expression in teleosts

Richard J Nuckels, Dana M Garcia

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 79 KB

english, 2013

156

A closer look into DNase I hypersensitivity

Housheng Hansen He, Clifford A Meyer, Henry Long, X Shirley Liu…

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

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PDF, 79 KB

english, 2013

157

Chromatin and higher-order chromosome organization shape the recombination landscape inC. elegans

Chitra V Kotwaliwale, Sasha A Langley, Andrea C Dose…

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 90 KB

english, 2013

158

The landscape of RNA polymerase II transcription initiation inC. elegansreveals a novel enhancer architecture

Ron Chen, Thomas Down, Julie Ahringer

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 83 KB

english, 2013

159

The 4-D landscape of the inflammatory response

Argyris Papantonis

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 87 KB

english, 2013

160

Genome-wide mapping of chromatin marks from 1,000 cells to study epigenetic reprogramming in primordial germ cells

Julie Brind’Amour, Sheng Liu, Mehdi Karimi, Aaron Bogutz…

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 87 KB

english, 2013

161

The ubiquitin hydrolase, USP22 contributes to 3’-end processing of JAK-STAT inducible genes

Edmond Chipumuro, Melissa A Henriksen

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 84 KB

english, 2013

162

eNOS expression in umbilical cord arterial endothelial cells depends on placental perfusion and is triggered by adaptive chromatin signatures

Jan Postberg, Miriam Kanders, Valerie Orth, Stefan Wirth…

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 74 KB

english, 2013

163

Genome-wide interplay between chromatin and the transcription machinery

B Franklin Pugh

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 78 KB

english, 2013

164

Germline epigenetics, and reprogramming in zebrafish early embryos

Magdalena E Potok, David A Nix, Timothy J Parnell…

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 80 KB

english, 2013

165

Polycomb/Trithorax group proteins collaborate with Heterochromatin protein 1 to regulateDrosophilasex determination

Janel Rodriguez, Jamila I Horabin

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 97 KB

english, 2013

166

Polymer models of topological insulators

Boryana Doyle, Maxim Imakaev, Geoffrey Fudenberg, Leonid Mirny

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 85 KB

english, 2013

167

Myoblast expansion defects leads to muscle growth delay and subsequent compensatory adaptation in adult Atrx cKO skeletal muscle

Michael S Huh, Keqin Yan, Tina Price O’Dea, David J Picketts

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 92 KB

english, 2013

168

Estrogen induced downregulation of gene expression and cell biological processes critical for genital tubercle formation via DNA methylation

Jia-Xin Jiang, Karen J Aitken, Tyler P Kirwan, Sevan Hopyan…

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 91 KB

english, 2013

169

Chd5 orchestrates chromatin remodeling during spermiogenesis

Wangzhi Li, Sang-Yong Kim, Ming Zhao, Marvin Meistrich…

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 81 KB

english, 2013

170

Identification of a novel imprinting mechanism at the X-linked imprinted locus,X-linked Lymphocyte Regulated 3/4(Xlr3/4)

Sohaib M Qureshi, Michael B Murphy, Seth Kasowitz…

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 97 KB

english, 2013

171

S cerevisiaegenome as a confined equilibrium polymer brush

Anton Goloborodko, Jon Matthew Belton, Geoffrey Fudenberg…

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 79 KB

english, 2013

172

Successful implementation of ChIP-seq antibody quality control at Diagenode using automated ChIP protocol on the SX-8G IP-Star®Compact

Ignacio Mazon, Sharon Squazzo, Jan Hendrickx, Géraldine Goens…

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 82 KB

english, 2013

173

The roles of long noncoding RNA in epigenetic regulation

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 81 KB

english, 2013

174

Developmental regulation of histone H2A deposition via serine-1 phosphorylation

Wei-Lin Wang, Joshua J Nicklay, Lissa Anderson, Joe Strukl…

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 86 KB

english, 2013

175

Modulation of DNA methylation and phenotypic switching in Smooth Muscle Cells by the extracellular matrix microenvironment

Jia-Xin Jiang, Karen J Aitken, Tyler P Kirwan, Nicole D Zhang…

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 95 KB

english, 2013

176

Comparison of multiplexed reduced representation bisulfite sequencing (mRRBS) with the 450K Illumina Human BeadChip: from concordance to practical applications for methylomic profiling in epigenetic epidemiologic studies

Juan J Carmona, Benedetta Izzi, Allan C Just, Jitendra Barupal…

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 95 KB

english, 2013

177

Genome-wide multi-parametric analysis of H2AX or γH2AX distributions during ionizing radiation-induced DNA damage response

Francesco Natale, Alexander Rapp, Wei Yu, Marco Durante…

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 97 KB

english, 2013

178

Global control of DNA replication timing by the budding yeast telomere protein Rif1

Laure Lemmens, Stefano Mattarocci, Isabella Marcomini…

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 101 KB

english, 2013

179

MMSET dysregulates gene expression in myeloma through global and focal changes in H3K36 and H3K27 methylation

Relja Popovic, Eva Martinez-Garcia, Quanwei Zhang…

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 89 KB

english, 2013

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